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rna sequencing (rna-seq) pipeline of partek flow software  (Partek)

 
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    Partek rna sequencing (rna-seq) pipeline of partek flow software
    Rna Sequencing (Rna Seq) Pipeline Of Partek Flow Software, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/partekflow+rnaseq+pipeline/pmc08595949-93-15-19
    Average 90 stars, based on 1 article reviews
    rna sequencing (rna-seq) pipeline of partek flow software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Identification of thiostrepton as a pharmacological approach to rescue misfolded alpha-sarcoglycan mutant proteins from degradation
    Article Snippet: Samples were loaded on an Ion PI v3 Chip and sequenced on the Ion Proton System using Ion PI Hi-Q sequencing 200 kit chemistry (200 bp read length; Thermofisher Scientific). .. The sequencing reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v6 Partek Inc). ..

    RNA Sequencing:

    Article Title: Identification of thiostrepton as a pharmacological approach to rescue misfolded alpha-sarcoglycan mutant proteins from degradation
    Article Snippet: Samples were loaded on an Ion PI v3 Chip and sequenced on the Ion Proton System using Ion PI Hi-Q sequencing 200 kit chemistry (200 bp read length; Thermofisher Scientific). .. The sequencing reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v6 Partek Inc). ..

    Article Title: Preclinical Evaluation of a Lentiviral Vector for Huntingtin Silencing
    Article Snippet: Samples were manually loaded on an Ion PI v3 chip and sequenced on the Ion Proton System using Ion PI Sequencing 200 Kit v3 chemistry (200 bp read length; Life Technologies). .. The Ion Proton reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v 4.0; Partek) using hg19 as a reference genome. .. To determine differentially expressed genes between groups, we quantified mapped reads using the Partek E/M algorithm, and differentially expressed genes were identified using the Partek Gene Specific Analysis (GSA) algorithm.

    Article Title: The striatal kinase DCLK3 produces neuroprotection against mutant huntingtin.
    Article Snippet: Samples were loaded on an Ion PI v2 BC Chip and sequenced on the Ion Proton System by Ion PI IC 200 Kit chemistry (200- bp read length; Life Technologies). .. The Ion Proton reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v 4.0, Partek Inc), with hg19 as the reference genome. .. We identified genes differentially expressed between groups, by quantifying mapped reads with the Partek E/M algorithm (the resulting counts represent the expression levels of more than 20 800 different genes present in the AmpliSeq Human Gene Expression panel) and applying the Partek Gene Specific Analysis (GSA) algorithm.

    Software:

    Article Title: Identification of thiostrepton as a pharmacological approach to rescue misfolded alpha-sarcoglycan mutant proteins from degradation
    Article Snippet: Samples were loaded on an Ion PI v3 Chip and sequenced on the Ion Proton System using Ion PI Hi-Q sequencing 200 kit chemistry (200 bp read length; Thermofisher Scientific). .. The sequencing reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v6 Partek Inc). ..

    Article Title: Preclinical Evaluation of a Lentiviral Vector for Huntingtin Silencing
    Article Snippet: Samples were manually loaded on an Ion PI v3 chip and sequenced on the Ion Proton System using Ion PI Sequencing 200 Kit v3 chemistry (200 bp read length; Life Technologies). .. The Ion Proton reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v 4.0; Partek) using hg19 as a reference genome. .. To determine differentially expressed genes between groups, we quantified mapped reads using the Partek E/M algorithm, and differentially expressed genes were identified using the Partek Gene Specific Analysis (GSA) algorithm.

    Article Title: The striatal kinase DCLK3 produces neuroprotection against mutant huntingtin.
    Article Snippet: Samples were loaded on an Ion PI v2 BC Chip and sequenced on the Ion Proton System by Ion PI IC 200 Kit chemistry (200- bp read length; Life Technologies). .. The Ion Proton reads (FASTQ files) were imported into the RNA-seq pipeline of Partek Flow software (v 4.0, Partek Inc), with hg19 as the reference genome. .. We identified genes differentially expressed between groups, by quantifying mapped reads with the Partek E/M algorithm (the resulting counts represent the expression levels of more than 20 800 different genes present in the AmpliSeq Human Gene Expression panel) and applying the Partek Gene Specific Analysis (GSA) algorithm.



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